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PCR Optimization logo
PCR Optimization
Category: PCR primers design, Calculators and converters

This online program helps to evaluate the quantity of primers and nucleotides for optimal PCR reaction and the necessary number of cycles. Registration not required.

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PS: Power and Sample Size Calculation logo
PS: Power and Sample Size Calculation
Category: Statistics software

PS is an interactive Windows program from Vanderbilt University for performing power and sample size calculations. It can be used for studies with dichotomous, continuous, or survival response measures. Registration not required.

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Broad Bioimage Benchmark Collection logo
Broad Bioimage Benchmark Collection
Category: Biomedical images search, Imaging software
Broad Bioimage Benchmark Collection allows: Image database, Broad

The Broad Bioimage Benchmark Collection (BBBC) is a collection of freely downloadable microscopy image sets intended as a resource for testing and validating automated image-analysis algorithms. In addition to the images themselves, each set includes a description of the biological application and some type of ground truth. Registration not required.

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ICRP logo
ICRP
Internationa Cancer Partenship
Category: Cancer research

Established in 2000, International Cancer Research Partnership (ICRP) is a unique alliance of cancer organizations working together to enhance global collaboration and strategic coordination of research. Registration not required.

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STRING logo
STRING
known and predicted protein interactions
Category: Protein interactions
STRING allows: database of known protein interactions, predict protein interactions

STRING is a database of known and predicted protein interactions. The interactions include direct (physical) and indirect (functional) associations. They are derived from Genomic Context, High-throughput Experiments (Conserved), Coexpression, Previous Knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable. The database currently covers 2,590,259 proteins from 630 organisms. Registration not required.

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ScienceJobs logo
ScienceJobs
Category: Biomedical funding and jobs
Subcategories: Jobs

ScienceJobs is a job site for recruiting the top scientists in associations with the Journal of American Science. Registration not required.

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multi-zPicture logo
multi-zPicture
Category: DNA alignment
Subcategories: NCBI

zPicture is a dynamic alignment and visualization tool that is based on blastz alignment program utilized by PipMaker. zPicture alignments can be automatically submitted to rVista 2.0 to identify conserved transcription factor binding sites. Registration not required.

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Reverse Translate logo
Reverse Translate
Category: Protein structure and function prediction

TReverse Translate accepts a protein sequence as input and uses a codon usage table to generate a DNA sequence representing the most likely non-degenerate coding sequence. A consensus sequence derived from all the possible codons for each amino acid is also returned. Use Reverse Translate when designing PCR primers to anneal to an unsequenced coding sequence from a related species Registration not required.

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Digital Dutch logo
Digital Dutch
Category: Calculators and converters

Multiuse converter for units on: Angle, Area, Bits, Density, Electric, Energy, Focrce, Fuel, Length, Mass, Power, Pressure, Speed, Temperature, Time, Volume Registration not required.

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Agency for Healthcare Research and Quality logo
Agency for Healthcare Research and Quality
Category: Biomedical funding and jobs

AHRQ, a web site of the US Dept Of Human Services, provides several funding opportunities in healthcare for US. Registration not required.

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Overlapping Primers logo
Overlapping Primers
Category: Genomic scale primers design

Overlapping Primers interacts with the Whitehead's Primer3 progra to create multiple overlapping PCR products in one sequence. Registration not required.

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DiAlign logo
DiAlign
Multiple sequence alignment
Category: DNA alignment

While standard alignment methods rely on comparing single residues and imposing gap penalties, DIALIGN constructs pairwise and multiple alignments by comparing entire segments of the sequences. No gap penalty is used. This approach can be used for both global and local alignment, but it is particularly successful in situations where sequences share only local homologies. Registration not required.

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ESPript logo
ESPript
Category: DNA alignment

ESPript, 'Easy Sequencing in PostScript', is a program which renders sequence similarities and secondary structure information from aligned sequences for analysis and publication purpose. Registration not required.

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GeneOrder logo
GeneOrder
Category: DNA alignment

Compare gene order between two small bacterial genomes Registration not required.

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Abbreviations logo
Abbreviations
Category: Dictionaries and writing aids

Browse the Web's Largest Acronyms & Abbreviations Resource Registration not required.

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H-BLOX logo
H-BLOX
Category: DNA alignment

H-BloX is a web-based JavaScript application that allows one to calculate and visualize the Shannon information or the relative entropy (Kullback-Leibler distance) of sequence alignment blocks. Various residue alphabets may be defined and useful modifications of the alignment block and the alphabet can be applied before calculation. Registration not required.

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Advanced PipMaker logo
Advanced PipMaker
Category: DNA alignment

PipMaker computes alignments of similar regions in two DNA sequences. The resulting alignments are summarized with a ``percent identity plot'', or ``pip'' for short. MultiPipMaker allows the user to see relationships among more than two sequences. All pairwise alignments with the first sequence are computed and then returned as interleaved pips. Moreover, MultiPipMaker can be requested to compute a true multiple alignment of the input sequences and return a nucleotide-level view of the results. Registration not required.

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VISTA logo
VISTA
Category: DNA alignment

VISualization Tools for Alignments: VISTA is a comprehensive suite of programs and databases for comparative analysis of genomic sequences. Registration not required.

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SNP Primers logo
SNP Primers
Category: Genomic scale primers design

designs primers around every SNP in a GenBank file. Registration not required.

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I-TASSER logo
I-TASSER
Category: Protein structure and function prediction

I-TASSER server is a web application for protein structure and function predictions. Models are built based on multiple-threading alignments by LOMETS and iterative TASSER simulations. I-TASSER (as 'Zhang-Server') was ranked as the No 1 server in recent CASP7 and CASP8 experiments. The server is in active development with the goal to provide accurate structural and function predictions using state-of-the-art algorithms. References: Ambrish Roy, Alper Kucukural, Yang Zhang. I-TASSER: a unified platform for automated protein structure and function prediction. Nature Protocols, vol 5, 725-738 (2010). Registration not required.

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