NOVELTIES
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Category: Biomedical images search, Imaging software
Broad Bioimage Benchmark Collection allows: Image database, Broad
The Broad Bioimage Benchmark Collection (BBBC) is a collection of freely downloadable microscopy image sets intended as a resource for testing and validating automated image-analysis algorithms. In addition to the images themselves, each set includes a description of the biological application and some type of ground truth. Registration not required.
Click here for more informationsPublished on 2012-06-29 04:46:21
PhenoRipper is an open-source software tool designed for rapid exploration of high-content microscopy images that permits rapid and intuitive comparison of images obtained under different experimental conditions based on image phenotype similarity.PhenoRipper is designed to serve as an unsupervised exploratory tool for analysis of fluorescence microscopy images for both novices and experts. Registration not required.
Click here for more informationsPublished on 2012-06-29 04:36:42
SimuCell is an open-source framework for specifying and rendering realistic microscopy images containing diverse cell phenotypes, heterogeneous populations, microenvironmental dependencies and imaging artifacts. SimuCell can generate heterogeneous cellular populations composed of diverse cell types and allows users to specify interdependencies among population, biomarker and cell phenotypes (S. Rajaram et al., Nature Methods 9, 634, 2012). Registration not required.
Click here for more informationsPublished on 2012-06-29 04:17:28
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expression and localization of proteins in human tissues
Category: Protein informations
The human protein atlas shows expression and localization of proteins in a large variety of normal human tissues, cancer cells and cell lines with the aid of immunohistochemistry (IHC) images and immunofluorescence (IF) confocal microscopy images (Marx V., Nature 509:645, 2014). Registration not required.
Click here for more informationsPublished on 2012-06-24 03:21:41
MedlinePlus (NIH National Library of Medicine)is a free Web site that provides consumer health information for patients, families, and Health care providers. MedlinePlus brings together information from NIH, other federal agencies, and reputable health information providers. MedlinePlus covers a wide range of health conditions and wellness issues, and includes key resources to inform patients about their health. Registration not required.
Click here for more informationsPublished on 2012-06-13 11:20:02
GeneCards maintained by Weizmann Institute of Science is a searchable, integrated, database of human genes that provides concise genomic, transcriptomic, genetic, proteomic, functional and disease related information on all known and predicted human genes. Registration not required.
Click here for more informationsPublished on 2012-05-30 09:36:40
I-TASSER server is a web application for protein structure and function predictions. Models are built based on multiple-threading alignments by LOMETS and iterative TASSER simulations. I-TASSER (as 'Zhang-Server') was ranked as the No 1 server in recent CASP7 and CASP8 experiments. The server is in active development with the goal to provide accurate structural and function predictions using state-of-the-art algorithms. References: Ambrish Roy, Alper Kucukural, Yang Zhang. I-TASSER: a unified platform for automated protein structure and function prediction. Nature Protocols, vol 5, 725-738 (2010). Registration not required.
Click here for more informationsPublished on 2012-05-30 09:32:03
MAPU is the Max-Planck Unified Proteome DB. Mass spectrometry (MS)-based proteomics on body fluids, cell lines, red blood cells, liver. MAPU datasets can serve as reference proteomes in biomarker discovery. Registration not required.
Click here for more informationsPublished on 2012-05-28 03:05:10
The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB. Protein sequences are the fundamental determinants of biological structure and function. Registration not required.
Click here for more informationsPublished on 2012-05-28 03:03:58
The mission of UniProt is to provide the scientific community with a comprehensive, high quality and freely accessible resource of protein sequence and functional information. The site provides UniProtKB (protein knowledgebase) consisting of Swiss-Prot and TrEMBL sections; UniRef that speeds up sequence similarities search; and UniParc a squence archive. Registration not required.
Click here for more informationsPublished on 2012-05-28 03:02:51
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Category: Calculators and converters
Speed of Rotation to Relative Centrifuge Force allows: convert the speed of centrifugation in relative centrifuge force
This program helps to convert the speed of centrifugation in relative centrifuge force. The radius of rotor should be known for the calculation. Registration not required.
Click here for more informationsPublished on 2012-05-27 15:53:02
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technical definitions and synonyms for drugs/agents used to treat patients with cancer or conditions related to cancer
Category: Drugs search
NCI Drug Dictionary allows: search drugs used to treat patients with cancer
The NCI Drug Dictionary contains technical definitions and synonyms for drugs/agents used to treat patients with cancer or conditions related to cancer. Each drug entry includes links to check for clinical trials listed in NCI's PDQ® Cancer Clinical Trials Registry. Registration required.
Click here for more informationsPublished on 2012-05-27 08:44:50
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a collection of disease entries capturing knowledge on genetic and environmental perturbations
Category: Diseases search
The KEGG DISEASE database is a collection of disease entries capturing knowledge on genetic and environmental perturbations. Diseases are viewed as perturbed states of the molecular system. Different types of diseases, including single-gene (monogenic) diseases, multifactorial diseases, and infectious diseases, are all treated in a unified manner as follows: Genetic perturbations, Environmental perturbations --> Perturbed molecular network --> Disease. Registration not required.
Click here for more informationsPublished on 2012-05-27 08:36:57
Wolfram Alpha offers a variety of calculators and converters for many topics: mathematics, statistics, medicine, chemistry, weather, dates, geography, life sciences, etc. Registration not required.
Click here for more informationsPublished on 2012-05-25 15:06:09
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Category: Calculators and converters
Chemical and radiochemical calculators allows: Dilute molar solutions, convert between moles and grams, calculate EC(anything) from EC50
Chemical and radiochemical calculators (QuickCalcs) offers radioactivity calculators. Moreover it create and dilute molar solutions, convert between moles and grams and calculate EC(anything) from EC50. Registration not required.
Click here for more informationsPublished on 2012-05-25 15:04:14
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Category: Calculators and converters
Mole/Gram Converters allows: convert between moles and grams, GraphPad
Mole/Gram Converters (QuickCalcs) converts between moles and grams Registration not required.
Click here for more informationsPublished on 2012-05-25 15:00:15
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Category: Calculators and converters
GraphPad Molarity Calculators allows: Calculate how to dilute a stock solution, calculate molarity from mass and volume, calculate mass from volume and concentration, calculate volume from mass and concentration
Molarity Calculators (QuickCalcs) is a web application (no installation required) that helps to dilute a stock solution or to calculate molarity from mass and volume, mass from volume and concentration, volume from mass and concentration. Registration not required.
Click here for more informationsPublished on 2012-05-25 14:58:33
Frequent math for the lab.DNA & Protein conversions. Dilution, molarity & temperature calculators Registration not required.
Click here for more informationsPublished on 2012-05-25 03:53:39
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online PCR primer design
Category: PCR primers design
Primer Blast allows: to design PCR primers
Primer Blast is a web application that uses Primer3 to design PCR primers and then submits them to BLAST search against user-selected database. The blast results are then automatically analyzed to avoid primer pairs that can cause amplification of targets other than the input template. Registration not required.
Click here for more informationsPublished on 2012-05-23 11:44:55
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a public archive and repository where nucleotide sequences generated by next-generation sequencing methodologies can be submitted
Category: Gene information search
ENA (European Nucleotide Archive) operates as a public archive and repository where nucleotide sequences generated by next-generation sequencing methodologies can be submitted. Data can be searched interactively and programmatically using free text and sequence similiary search based queries. It is a useful utility also for patent data search.ENA Registration not required.
Click here for more informationsPublished on 2012-05-20 16:02:47
Biomedical search tools
Online genomic tools
Online proteomics tools
Calculators
Biomedical lab tools
Scientific writing/reading
Biomedical communities
Biomedical funding and jobs
Medical topics
Biomedical softwares