NOVELTIES
The goal of the Dependency Map (DepMap) portal is to empower the research community to make discoveries related to cancer vulnerabilities by providing open access to key cancer dependencies analytical and visualization tools. It would systematically map cancer vulnerabilities by perturbing genes and proteins across many cancer types as well as across clinical stages and settings. The Cancer Dependency Map would collect different data and ask different questions from sequencing projects by looking at the experimental effects of perturbations (see Boehm et al., Nature 589:514, 2021). Registration not required.
Click here for more informationsPublished on 2021-02-21 10:58:23
The GTEx Consortium adopts a strategy called expression quantitative trait loci (eQTL) mapping that allows the researchers to generate a comprehensive catalogue of associations between genetic variation and gene expression across many tissues in many individuals. The processed data are available in this website (see: Nat Genet. 2013 June ; 45(6): 580–585; Ward & Gilad Nature 550:190, 2017). Registration not required.
Click here for more informationsPublished on 2020-12-07 08:30:07
Microscopy Image Browser (MIB) is a high-performance Matlab-based software package for advanced image processing, segmentation and visualization of multi-dimensional (2D-4D) light and electron microscopy dataset (see Belevich et al., PLoS Biol. 14, e1002340 (2016). Registration not required.
Click here for more informationsPublished on 2020-11-22 08:45:51
Biorender is a web-based tool designed for life-science and medical illustration, is like a feature-lite version of Illustrator. It features an extensive library of scalable ‘icons’ from across the life sciences and medicine; researchers can drop these onto a canvas and manipulate them as if they were circles or polygons. Biorender is mainly utilized by researchers for professional-level illustrated explainers of proposed models, experimental methods or biochemical pathways (see Jeffrey M Perkel, Nature 582:137, 2020). BioRender is free with limitations for educational use. Registration required.
Click here for more informationsPublished on 2020-06-07 04:46:28
Nextstrain is an open-source project to harness the scientific and public health potential of pathogen genome data, including the Novel coronavirus (2019-nCoV). It provides a continually-updated view of publicly available data alongside powerful analytic and visualization tools for use by the community. The goal is to aid epidemiological understanding and improve outbreak response. Registration not required.
Click here for more informationsPublished on 2020-03-31 02:20:20
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updated data and charts in Italy and in the other European countries
Category: COVID19
COVID infection updated data and charts in Italy and in the other European countries by the Sole24ore group. Registration not required.
Click here for more informationsPublished on 2020-03-18 05:06:54
Updated maps and charts of COVID-19 infection in Italy updated 2023(website in Italian) Registration not required.
Click here for more informationsPublished on 2020-03-18 04:50:18
Consente di fare calcoli per semplici diluizioni. Si marca con il quadratino nero la voce da calcolare. Registration not required.
Click here for more informationsPublished on 2020-03-18 04:15:52
medRxiv (pronounced med-archive) is a free online archive and distribution server for complete but unpublished manuscripts (preprints) in the medical, clinical, and related health sciences. Registration not required.
Click here for more informationsPublished on 2020-02-29 11:53:54
JBrowse is a fast and full-featured scalable genome browser built completely with JavaScript and HTML5. It can run on your desktop, or be embedded in your website (see Bues et al., Genome Biol 17, 66 (2016) doi:10.1186/s13059-016-0924-1). Registration not required.
Click here for more informationsPublished on 2019-12-11 10:43:27
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Enhancing the QUAlity and Transparency Of health Research
Category: Biomedical guidelines, Biomedical journals
The site contains a comprehensive searchable database of reporting guidelines and also links to other resources relevant to research reporting (Randomised trials; Observational studies; Systematic reviews; Study protocols; Diagnostic/prognostic studies; Case reports; Clinical practice guidelines; Qualitative research; Animal pre-clinical studies; Quality improvement studies; Economic evaluation). Registration not required.
Click here for more informationsPublished on 2019-10-13 03:50:19
QCancer is an algorithm, which can be used to calculate the absolute risk of a patient having an undiagnosed cancer based on a number of factors.The QCancer algorithm and the cancer risk score take into account patient symptoms, risk factors, such as age and sex, smoking status, family history, postcode and certain comorbidities. Registration not required.
Click here for more informationsPublished on 2019-10-12 04:56:56
The web site provide a web application to construct high-quality estimation graphics, that displays an experimental dataset’s complete statistical information. Plots can be saved in image formats suitable for publication (PNG and SVG).With the web application and open-source libraries, DABEST caters to both scripting and spreadsheet workflows, empowering all researchers to rapidly adopt better data-analysis practices (see Ho et al., Nature Methods 16:565,2019). Registration not required.
Click here for more informationsPublished on 2019-09-14 10:44:34
Free Statistics Calculators from Daniel Soper is a comprehensive, easy to navigate, well organized and well presented site to perform several statistical calculi Registration not required.
Click here for more informationsPublished on 2019-09-14 10:15:30
CancerMine resource is a literature-mined and routinely updated database of drivers, oncogenes and tumor suppressors in different types of cancer. This resource provides information on genes that are drivers (frequently harbor cancer-promoting mutations), oncogenes (cancer-promoting) and tumor suppressors (protective against cancer) in a large number of different cancers. Context is key as some genes (e.g. NOTCH1) are oncogenes in one cancer and tumor suppressive in another. All data has been text-mined from articles and the source sentence and links are provided. (Lever et al., Nature Meth 16:505, 2019). Registration not required.
Click here for more informationsPublished on 2019-06-09 11:04:42
This web site offers free resources for students and researchers working with statistics. All the calculators and tools featured here have been designed with ease of use and clarity of presentation in mind. The web site has three main sections: statistical calculators, which deals mainly with hypothesis testing; p-value calculators, which allow you to derive p-values from Z, t, chi-square and Pearson (r); and descriptive statistics - averages, variance, and easy histogram and bar chart makers. Registration not required.
Click here for more informationsPublished on 2018-11-30 03:52:43
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browse restriction enzymes by name, sequence, overhang, or type
Category: Biomedical products search
Enzyme Finder by New England Biolabs allows you to select restriction enzymes by name, sequence, overhang, or type. Sequences should be entered using single letter code nomenclature. In search results, enzymes supplied by NEB are listed first and displayed as links. Registration not required.
Click here for more informationsPublished on 2018-11-24 14:22:29
Gene ID Conversion Tool is a comprehensive and fast accession mapping system in DAVID 2.1. With it any given gene accession can be quickly mapped to another based on the user's choice. The tool also automatically suggests possible choices for the ambiguous gene accessions in the list. Registration not required.
Click here for more informationsPublished on 2018-11-24 14:09:23
The ProteomeTools project is a joint effort of the Technical University of Munich (TUM), JPT Peptide Technologies, SAP SE and Thermo Fisher Scientific. It is dedicated to translating the human proteome into molecular and digital tools for drug discovery, personalized medicine and life science research. Over the course of the project, ~1.4 million synthetic peptides covering essentially all human gene products including important post translational modifications will be synthesized and analyzed using multimodal LC-MS/MS. We welcome participation to the project by the scientific community by e.g. suggesting sets of peptides to synthesize, offering measurements using other types of LC-MS/MS or developing applications and data analysis tools. Registration not required.
Click here for more informationsPublished on 2018-06-24 04:13:24
A protein knowledge-base. It includes entries on more than 20,000 proteins and nearly 200,000 posttranslational modifications. Registration not required.
Click here for more informationsPublished on 2018-06-20 09:43:16
Biomedical search tools
Online genomic tools
Online proteomics tools
Calculators
Biomedical lab tools
Scientific writing/reading
Biomedical communities
Biomedical funding and jobs
Medical topics
Biomedical softwares